RefSeqGene A collection of human gene-specific reference genomic sequences. ProbeĪ public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities. For example, a population set provides information on genetic variation within an organism, while a phylogenetic set may contain sequences, and their alignment, of a single gene obtained from several related organisms. Each record in the database is a set of DNA sequences. PopSetĭatabase of related DNA sequences that originate from comparative studies: phylogenetic, population, environmental and, to a lesser degree, mutational. Searching the Nucleotide Database will yield available results from each of its component databases. Nucleotide DatabaseĪ collection of nucleotide sequences from several sources, including GenBank, RefSeq, the Third Party Annotation (TPA) database, and PDB. Currently, an automated pipeline clusters and identifies sequences supplied primarily by public health laboratories to assist in the investigation of foodborne disease outbreaks and discover potential sources of food contamination. NCBI Pathogen Detection ProjectĪ project involving the collection and analysis of bacterial pathogen genomic sequences originating from food, environmental and patient isolates. This resource also has links to other flu sequence resources, and publications and general information about flu viruses. It provides tools for flu sequence analysis, annotation and submission to GenBank. Influenza VirusĪ compilation of data from the NIAID Influenza Genome Sequencing Project and GenBank. The exceptions are the EST and GSS divisions, which are accessed through the Nucleotide EST and Nucleotide GSS databases, respectively. GenBank consists of several divisions, most of which can be accessed through the Nucleotide database. These three organizations exchange data on a daily basis. GenBank is part of the International Nucleotide Sequence Database Collaboration, which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at NCBI. The NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. dbSNP contains population-specific frequency and genotype data, experimental conditions, molecular context, and mapping information for both neutral variations and clinical mutations. Includes single nucleotide variations, microsatellites, and small-scale insertions and deletions. Database of Short Genetic Variations (dbSNP) Consensus CDS (CCDS)Ī collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The BioSample database contains descriptions of biological source materials used in experimental assays. This resource describes project scope, material, and objectives and provides a mechanism to retrieve datasets that are often difficult to find due to inconsistent annotation, multiple independent submissions, and the varied nature of diverse data types which are often stored in different databases. BioProject (formerly Genome Project)Ī collection of genomics, functional genomics, and genetics studies and links to their resulting datasets. The records display collection codes, information about the collections' home institutions, and links to relevant data at NCBI. BioCollectionsĪ curated set of metadata for culture collections, museums, herbaria and other natural history collections. Database of Single Nucleotide Polymorphisms (dbSNP)Ī database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.Database of Genomic Structural Variation (dbVar).Online Mendelian Inheritance in Man (OMIM).Database of Genotypes and Phenotypes (dbGaP).Structure (Molecular Modeling Database).Conserved Domain Search Service (CD Search).BLAST (Basic Local Alignment Search Tool).
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